A one-stop list of our most popular differential expression resources for background, tutorials, and code to do your own project.
Our last blog on third generation sequencing is still mostly relevant and current (here), so this post is an update where improvements are noted. The methods have matured a lot. The players are still largely the same: PacBio, Nanopore, Bionano and Hi-C. 10x has dropped out of the genomics field to focus almost exclusively on…… Read more »
Since our first transcriptomics workshop in 2018, many cutting-edge RNA sequencing technologies have become more popular. Some of these methods, like Iso-Seq, have made their way into non-medical fields. Direct and single-cell RNA sequencing methods, on the other hand, are used almost exclusively in cancer biology, biomarker discovery, and neurobiology.
NCGAS starts working with machine learning in our REU projects analyzing frog calls.
Thinking about doing a genome project? This technical paper outlines a good place to start, as well as what software to look into, and brings up some important considerations.
Wondering about this last step in the pipeline and how it is filtering all those assemblies? Here’s the details!
Anvi’o is now available as pre-configured VM on Jetstream
Updating all your virtual machines with one command!
How to run the assembler software canu on IU’s Carbonate Cluster
Storage, compute, and cloud resources now extended to ecologists!