NCGAS starts working with machine learning in our REU projects analyzing frog calls.
Thinking about doing a genome project? This technical paper outlines a good place to start, as well as what software to look into, and brings up some important considerations.
Wondering about this last step in the pipeline and how it is filtering all those assemblies? Here’s the details!
Anvi’o is now available as pre-configured VM on Jetstream
Updating all your virtual machines with one command!
How to run the assembler software canu on IU’s Carbonate Cluster
Storage, compute, and cloud resources now extended to ecologists!
Permissions can be a frustrating thing to deal with on shared computers, especially without much introduction. Hopefully, this walkthrough will introduce you to the major concepts and reduce the confusion! Why do we have them? Unix permissions allow us to control who can access and change files and directories, which is critical on a shared…… Read more »
The Broad’s RNA assembler Trinity is one of the most popular tools for assembling short reads (~100-150 base pairs) of RNA into the transcripts (~200-15000bp) produced by an organism. According to recent git pull stats, over 16,000 people have downloaded the program over 4.4 million times since 2015. And that number is increasing every…… Read more »
A common question I was downloading SRA files and convert them into fastq files in gz format. However, I got an error message (pasted below). I noticed that “Disk quota exceeded” was mentioned. Not sure why I received such error. How do deal with this issue When using the SRA, the ncbi uses home as…… Read more »