A one-stop list of our most popular differential expression resources for background, tutorials, and code to do your own project.
analyses
An up-date on next generation sequencing and scaffolding, 04/2021
Our last blog on third generation sequencing is still mostly relevant and current (here), so this post is an update where improvements are noted. The methods have matured a lot. The players are still largely the same: PacBio, Nanopore, Bionano and Hi-C. 10x has dropped out of the genomics field to focus almost exclusively on…… Read more »
An Update to RNA-seq Technology
Since our first transcriptomics workshop in 2018, many cutting-edge RNA sequencing technologies have become more popular. Some of these methods, like Iso-Seq, have made their way into non-medical fields. Direct and single-cell RNA sequencing methods, on the other hand, are used almost exclusively in cancer biology, biomarker discovery, and neurobiology.
NCGAS REU Students Analyze Frog Calls Using Machine Learning
NCGAS starts working with machine learning in our REU projects analyzing frog calls.
Recent Tegu genome paper serves as a great primer for non-model genome assembly
Thinking about doing a genome project? This technical paper outlines a good place to start, as well as what software to look into, and brings up some important considerations.
How EviGene Works
Wondering about this last step in the pipeline and how it is filtering all those assemblies? Here’s the details!
Running Anvi’o on Jetstream
Anvi’o is now available as pre-configured VM on Jetstream
Getting Started with Ansible
Updating all your virtual machines with one command!
Running Canu on Carbonate
How to run the assembler software canu on IU’s Carbonate Cluster
NCGAS has now added XSEDE resources to our field station support!
Storage, compute, and cloud resources now extended to ecologists!