Update 2/6/2018: We have uploaded the presentations and posters for those of you who couldn’t make it! Just click the Scholarworks link!
Join NCGAS at PAG XXVI in January, where we will be presenting 8 times, with 2 more presentations featuring work we collaborated on (NCGAS affiliates are starred)!
Presentation Abstracts:
National Center for Genome Analysis Support (NCGAS) use and development of Tripal Genome Browsers on XSEDE’s Jetstream
Sheri A. Sanders*, Carrie Ganote*, Bhavya Papudeshi* and Tom Doak*
Scholarworks
Demo Abstracts:
Introducing CAFE: Computational Analysis of (gene) Family Evolution.
Carrie Ganote*, Fábio H. K. Mendes, Ben Fulton*, Robert Henschel* and Matthew W. Hahn
Monday, January 15, 2018 02:35 PM – 02:50 PM California
Scholarworks
Bioinformatic Analysis using Jetstream, a Cloud Computing Environment
Bhavya Papudeshi*, Sheri A. Sanders*, Carrie Ganote*, Jeremy Fischer and Tom Doak*
Wednesday, January 17, 2018 12:00 PM – 12:15 PM California
Scholarworks
NCGAS makes Robust Transcriptome Assembly Easier with a Readily Usable Workflow Following de novo Assembly Best Practices
Sheri A. Sanders*, Carrie Ganote*, Bhavya Papudeshi*, Keithanne Mockaitis* and Tom Doak*
Wednesday, January 17, 2018 12:15 PM – 12:30 PM California
Scholarworks
Poster Abstracts:
Bioinformatic Analysis Using Jetstream, a Cloud Computing Environment
Bhavya Papudeshi*, Sheri A. Sanders*, Carrie Ganote*, Jeremy Fischer and Tom Doak*
Scholarworks
Reconstruction of Metagenome-Assembled Microbial Genomes from a Micro-biome
Bhavya Papudeshi*
Scholarworks
Stilbenoid Prenylation Pathway Discovery in Peanut using Targeted Transcriptomics
Sheri Sanders*, Ram Podicheti, Tianhong Yang, Lingling Fang, Srinivas Jayanthi, Gayathri Rajan, Thallapuranam Krishnaswamy Suresh Kumar, Fabricio Medina-Bolivar and Keithanne Mockaitis*
Scholarworks
Solving the Challenges of Complex Genome Analysis Collaborations on-line using XSEDE Resources
Carrie Ganote*, Sheri A. Sanders*, Le-Shin Wu*, Tom Doak* and Keithanne Mockaitis*
Scholarworks
Collaborator Abstracts:
Chromosome Scale Scaffolding of the High-Quality Genome Assemblies of the Allotetraploid Coffea arabica and Its Maternal Ancestor C. eugenioides and Validation Using Genetic and Physical Mapping Data
Aleksey Zimin, Carlos Ernesto Maldonado, Marcela Yepes, Keithanne Mockaitis*, Pilar Moncada, Carrie Ganote*, Sheri A. Sanders*, Carmenza E. Góngora, Claudia Flórez, James A Yorke, Alvaro Gaitán and Herb Aldwinckle
Sunday, January 14, 2018 04:00 PM – 04:20 PM Pacific Salon 3
Targeted Sequencing in Allopolyploids: Comparison of BAC-By-BAC and Whole Genome Approaches Using Third Generation Sequencing
Carlos Ernesto Maldonado, Beatriz Padilla, Alvaro Gaitán, Marcela Yepes, Aleksey Zimin, Keithanne Mockaitis*, Carrie Ganote*, Sheri A. Sanders*, Dave Kudrna, Rod A. Wing and Herb Aldwinckle
Sunday, January 14, 2018 04:20 PM – 04:40 PM Pacific Salon 3